Typed the conda command but again it was not working: bash-3.2$ conda -versionĬan somebody suggest if I'm missing something? any help will be greatly appreciated. bash_profileĮxport PATH="/usr/bin:usr/local/bin:/bin:usr/sbin:/sbin:/opt/anaconda3/bin"Įxit the terminal session and then opened another terminal window. I checked the content of the file: bash-3.2$ cat. In vi editor: export PATH="usr/local/bin:usr/bin:/bin:usr/sbin:/sbin:/opt/anaconda3/bin" bash_profile and added the export PATH line as follows $vi. Add conda-forge to the list of channels you. bash_profile_bk by the following command $mv. If you are using python provided by Anaconda distribution, you are almost ready to go. _conda_setup="$('/opt/anaconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)" # !! Contents within this block are managed by 'conda init' !! bash_profile file in my home directory in vi editor and found that the following lines were already there in the file: bash-3.2$ cat. I tried to add anaconda by running the following command: export PATH="usr/local/bin:usr/bin:/bin:usr/sbin:/sbin:/opt/anaconda3/bin"Īfter this conda commands were working on the same session but it was not when a new terminal window was opened. I checked the PATH by executing echo$PATH and found that Anaconda directory is not included in the path. Next day when I opened the terminal and tried executing conda commands surprisingly I was getting command not found error. I checked this by running the command conda -version it was giving the result of conda 4.8.2. And then by using the graphical wizard I installed Anaconda successfully in my macbook. Pressing 'Enter' (or entering any other command) will terminate the script.I downloaded the Anaconda individual edition 2020-2 graphical installer. To run Molywood, provide the name of the input file, e.g. Now you can run molywood just typing molywood in your terminal. Run the Python Package Installer to install manually the last dependency: As VMD is an external software, macOS will ask you for permissions in order to install it.You must agree to the terms of the license: Note that although VMD software is free for academic use, it is mandatory to be registered for downloading it.Please go to the following URL and download the *.dmg file: As VMD is not available for macOS in Anaconda, we must install it manually.Once the environment has been successfully created, please follow the next steps for installing all the dependencies needed for the execution of : VMD (Visual Molecular Dynamics) Once the molywood conda environment is created, activate it:.Open your terminal and go to the folder where your environment.yml file has been downloaded and follow the next steps: The structure of this file is as follows:ĭownload the YAML file environment.yml to your computer clicking the button below:ĭownload environment.yml Create conda environment Environment creation If it doesn't work, the path must be exported:Įxport PATH=/home/USER/anaconda3/bin:$PATHįor creating a new conda environment, we need to download a YAML file with all the dependencies that must be installed into our environment. When the execution is finished, try to execute conda in the terminal window.The process of installation can last several minutes:.Double click on the *.pkg file and follow the instructions:.Be sure that the macOS tab is selected and Download Python 3.x version.Install AnacondaĪlthough the installation can be done without using Anaconda, we strongly recommend it as it contains numpy and matplotlib as a pre-installed package. The molywood tool has been developed in Python version 3 and therefore it must be run over a Python 3 installation or environment.
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